# packages with C extensions
Cheetah==2.4.4
bx-python==0.7.3
MarkupSafe==0.23
PyYAML==3.11
SQLAlchemy==1.0.8
mercurial==3.5
numpy==1.9.2
pycrypto==2.6.1
python_lzo==1.8

# extra functionality from Dannon
pysam==0.8.3+gx1

# pure Python packages
Paste==1.7.5.1
PasteDeploy==1.5.2
docutils==0.12
wchartype==0.1
repoze.lru==0.6
Routes==2.2
WebOb==1.4.1
WebHelpers==1.3
Mako==1.0.2
pytz==2015.4
Babel==2.0
Beaker==1.7.0

# BioBlend and dependencies
bioblend==0.6.1
boto==2.38.0
requests==2.8.1

# WebError and dependences
WebError==0.11
Pygments==2.0.2

# kombu and dependencies
kombu==3.0.26
amqp==1.4.6
anyjson==0.3.3

# sqlalchemy-migrate and dependencies
sqlalchemy-migrate==0.10.0
decorator==4.0.2
Tempita==0.5.3dev
sqlparse==0.1.16
pbr==1.8.0
six==1.9.0 # six is also a Pulsar client dep
Parsley==1.3
nose==1.3.7
SVGFig==1.1.6

# Fabric and dependencies
Fabric==1.10.2
paramiko==1.15.2
ecdsa==0.13
# pycrypto, but it is a direct Galaxy dependency as well

# Can't use Whoosh latest due to a bug but need to backport a bugfix from a
# newer release.
#
# https://bitbucket.org/mchaput/whoosh/pull-requests/50/fix-lru-thread-safety/diff
Whoosh==2.4.1+gx1